lbann::smiles_data_reader Member List

This is the complete list of members for lbann::smiles_data_reader, including all inherited members.

at_new_epoch() const	lbann::generic_data_reader	inline
build_some_maps()	lbann::smiles_data_reader	private
close_file(size_t index_in)	lbann::data_reader_sample_list< sample_list_ifstream< long long > >
construct_conduit_node(conduit::Node &node, std::istream *istream, size_t sample_id, size_t buf_offset=0)	lbann::smiles_data_reader	private
copy() const override	lbann::smiles_data_reader	inlinevirtual
copy_members(const smiles_data_reader &rhs)	lbann::smiles_data_reader	private
data_reader_sample_list< sample_list_ifstream< long long > >::copy_members(const data_reader_sample_list &rhs)	lbann::data_reader_sample_list< sample_list_ifstream< long long > >
create_datum_view(CPUMat &X, const int mb_idx)	lbann::generic_data_reader	inlineprotected
data_reader_sample_list(bool shuffle=true)	lbann::data_reader_sample_list< sample_list_ifstream< long long > >
data_reader_sample_list(const data_reader_sample_list &)	lbann::data_reader_sample_list< sample_list_ifstream< long long > >
data_store_active() const	lbann::generic_data_reader	virtual
decode_smiles(const std::vector< unsigned short > &data, std::string &out)	lbann::smiles_data_reader
do_preload_data_store() override	lbann::smiles_data_reader	privatevirtual
encode_smiles(const char *smiles, unsigned short size, std::vector< unsigned short > &data)	lbann::smiles_data_reader
encode_smiles(const std::string &smiles, std::vector< unsigned short > &data)	lbann::smiles_data_reader
error_check_counts() const	lbann::generic_data_reader	protected
fetch(std::map< data_field_type, CPUMat *> &input_buffers, El::Matrix< El::Int > &indices_fetched, size_t mb_size)	lbann::generic_data_reader
fetch(std::vector< conduit::Node > &samples, El::Matrix< El::Int > &indices_fetched, size_t mb_size)	lbann::generic_data_reader
fetch_conduit_node(conduit::Node &sample, int data_id)	lbann::generic_data_reader	inlineprotectedvirtual
fetch_data_block(std::map< data_field_type, CPUMat *> &input_buffers, El::Int block_offset, El::Int block_stride, El::Int mb_size, El::Matrix< El::Int > &indices_fetched)	lbann::generic_data_reader	protectedvirtual
fetch_data_block_conduit(std::vector< conduit::Node > &samples, El::Int block_offset, El::Int block_stride, El::Int mb_size, El::Matrix< El::Int > &indices_fetched)	lbann::generic_data_reader	protected
fetch_data_field(data_field_type data_field, CPUMat &Y, int data_id, int mb_idx)	lbann::generic_data_reader	inlineprotectedvirtual
fetch_datum(CPUMat &X, int data_id, int mb_idx) override	lbann::smiles_data_reader	privatevirtual
fetch_label(CPUMat &Y, int data_id, int mb_idx) override	lbann::smiles_data_reader	privatevirtual
fetch_response(CPUMat &Y, int data_id, int mb_idx) override	lbann::smiles_data_reader	privatevirtual
file_handle_type typedef	lbann::data_reader_sample_list< sample_list_ifstream< long long > >
finish_data_store_mini_batch_exchange()	lbann::generic_data_reader
generic_data_reader(bool shuffle=true)	lbann::generic_data_reader	inline
generic_data_reader(const generic_data_reader &)=default	lbann::generic_data_reader
get_absolute_sample_count() const	lbann::generic_data_reader	protected
get_base_offset() const	lbann::generic_data_reader	inline
get_comm() const	lbann::generic_data_reader	inline
get_current_mini_batch_index() const	lbann::generic_data_reader	inline
get_current_mini_batch_size() const	lbann::generic_data_reader
get_current_step_in_epoch() const	lbann::generic_data_reader	inline
get_data_dims() const override	lbann::smiles_data_reader	inlinevirtual
get_data_filename() const	lbann::generic_data_reader
get_data_sample_list() const	lbann::generic_data_reader
get_data_store() const	lbann::generic_data_reader
get_data_store()	lbann::generic_data_reader
get_data_store_ptr() const	lbann::generic_data_reader	inline
get_execution_mode_split_fraction(execution_mode m) const	lbann::generic_data_reader	protected
get_file_dir() const	lbann::generic_data_reader
get_indices()	lbann::generic_data_reader	inline
get_iteration_stride() const	lbann::generic_data_reader	inline
get_label_filename() const	lbann::generic_data_reader
get_last_mini_batch_size() const	lbann::generic_data_reader	inline
get_linearized_data_size() const override	lbann::smiles_data_reader	inlinevirtual
get_linearized_label_size() const override	lbann::smiles_data_reader	inlinevirtual
get_linearized_response_size() const override	lbann::smiles_data_reader	inlinevirtual
get_linearized_size(data_field_type const &data_field) const	lbann::generic_data_reader	virtual
get_loaded_mini_batch_index() const	lbann::generic_data_reader	inline
get_loaded_mini_batch_size() const	lbann::generic_data_reader
get_local_file_dir() const	lbann::generic_data_reader
get_metadata_filename()	lbann::smiles_data_reader	inline
get_mini_batch_max() const	lbann::generic_data_reader	inline
get_mini_batch_size() const	lbann::generic_data_reader	inline
get_my_indices() const	lbann::smiles_data_reader
get_next_position() const	lbann::generic_data_reader
get_num_data() const	lbann::generic_data_reader	inlinevirtual
get_num_indices_to_use() const	lbann::generic_data_reader
get_num_iterations_per_epoch() const	lbann::generic_data_reader	inline
get_num_labels() const override	lbann::smiles_data_reader	inlinevirtual
get_num_parallel_readers() const	lbann::generic_data_reader	inline
get_num_responses() const	lbann::generic_data_reader	inlinevirtual
get_num_unused_data(execution_mode m) const	lbann::generic_data_reader
get_position() const	lbann::generic_data_reader	inline
get_raw_sample(std::istream *istrm, size_t index, size_t buf_offset=0)	lbann::smiles_data_reader
get_reset_mini_batch_index() const	lbann::generic_data_reader	inline
get_role() const	lbann::generic_data_reader	inline
get_sample(size_t index)	lbann::data_reader_sample_list< sample_list_ifstream< long long > >	inline
get_sample_list()	lbann::data_reader_sample_list< sample_list_ifstream< long long > >	inline
get_sample_origin(const size_t index_in, std::string &filename_out, size_t &offset_out, unsigned short &length_out) const	lbann::smiles_data_reader
get_sample_stride() const	lbann::generic_data_reader	inline
get_sequence_length()	lbann::smiles_data_reader	inline
get_shuffled_indices() const	lbann::generic_data_reader	inline
get_slice_points(const slice_points_mode var_category, bool &is_supported)	lbann::generic_data_reader	inlinevirtual
get_stride_to_last_mini_batch() const	lbann::generic_data_reader	inline
get_stride_to_next_mini_batch() const	lbann::generic_data_reader	inline
get_type() const override	lbann::smiles_data_reader	inlinevirtual
get_unused_data(execution_mode m)	lbann::generic_data_reader
get_unused_indices(execution_mode m)	lbann::generic_data_reader
get_use_fraction() const	lbann::generic_data_reader	protected
has_conduit_output()	lbann::generic_data_reader	inlinevirtual
has_data_field(data_field_type data_field) const	lbann::generic_data_reader	inlinevirtual
has_labels() const	lbann::generic_data_reader	inlinevirtual
has_list_per_model() const	lbann::generic_data_reader	inlinevirtual
has_list_per_trainer() const	lbann::generic_data_reader	inlinevirtual
has_responses() const	lbann::generic_data_reader	inlinevirtual
instantiate_data_store()	lbann::generic_data_reader
is_delimiter(const char c)	lbann::smiles_data_reader	inlineprivate
is_shuffled() const	lbann::generic_data_reader	inline
keep_sample_order(bool same_order=false)	lbann::generic_data_reader
LengthBinarySize	lbann::smiles_data_reader	private
load() override	lbann::smiles_data_reader	virtual
load_from_checkpoint_distributed(persist &p, execution_mode mode)	lbann::generic_data_reader
load_from_checkpoint_shared(persist &p, execution_mode mode)	lbann::generic_data_reader
load_list_of_samples(const std::string sample_list_file)	lbann::smiles_data_reader
load_list_of_samples_from_archive(const std::string &sample_list_archive)	lbann::data_reader_sample_list< sample_list_ifstream< long long > >	protected
load_offsets_and_lengths()	lbann::smiles_data_reader	private
load_sample(std::istream *istrm, size_t index, std::vector< unsigned short > &output, size_t buf_offset=0)	lbann::smiles_data_reader	private
load_vocab(std::string filename)	lbann::smiles_data_reader
load_vocab(std::stringstream &s)	lbann::smiles_data_reader
m_absolute_sample_count	lbann::generic_data_reader
m_base_offset	lbann::generic_data_reader
m_bos	lbann::smiles_data_reader	private
m_comm	lbann::generic_data_reader	protected
m_current_mini_batch_idx	lbann::generic_data_reader
m_current_pos	lbann::generic_data_reader
m_data_fn	lbann::generic_data_reader
m_data_sample_list	lbann::generic_data_reader
m_data_store	lbann::generic_data_reader	protected
m_eos	lbann::smiles_data_reader	private
m_execution_mode_split_fraction	lbann::generic_data_reader
m_file_dir	lbann::generic_data_reader
m_filename_to_local_id_set	lbann::smiles_data_reader	private
m_first_n	lbann::generic_data_reader
m_gan_label_value	lbann::generic_data_reader	protected
m_gan_labelling	lbann::generic_data_reader	protected
m_index_to_filename	lbann::smiles_data_reader	private
m_index_to_local_id	lbann::smiles_data_reader	private
m_io_thread_pool	lbann::generic_data_reader	protected
m_issue_warning	lbann::generic_data_reader	protected
m_iteration_stride	lbann::generic_data_reader
m_keep_sample_order	lbann::generic_data_reader	protected
m_label_fn	lbann::generic_data_reader
m_last_mini_batch_size	lbann::generic_data_reader
m_linearized_data_size	lbann::smiles_data_reader	private
m_linearized_label_size	lbann::smiles_data_reader	private
m_linearized_response_size	lbann::smiles_data_reader	private
m_loaded_mini_batch_idx	lbann::generic_data_reader
m_local_file_dir	lbann::generic_data_reader
m_local_to_index	lbann::smiles_data_reader	private
m_max_files_to_load	lbann::generic_data_reader
m_metadata_filename	lbann::smiles_data_reader	private
m_mini_batch_size	lbann::generic_data_reader
m_missing_char_in_vocab_count	lbann::smiles_data_reader	private
m_missing_chars	lbann::smiles_data_reader	private
m_mutex	lbann::smiles_data_reader	private
m_num_iterations_per_epoch	lbann::generic_data_reader
m_num_labels	lbann::smiles_data_reader	private
m_num_parallel_readers	lbann::generic_data_reader
m_pad	lbann::smiles_data_reader	private
m_reset_mini_batch_index	lbann::generic_data_reader
m_role	lbann::generic_data_reader
m_sample_list	lbann::data_reader_sample_list< sample_list_ifstream< long long > >	protected
m_sample_offsets	lbann::smiles_data_reader	private
m_sample_stride	lbann::generic_data_reader
m_sequence_length	lbann::smiles_data_reader	private
m_shuffle	lbann::generic_data_reader
m_shuffled_indices	lbann::generic_data_reader
m_stride_to_last_mini_batch	lbann::generic_data_reader
m_stride_to_next_mini_batch	lbann::generic_data_reader
m_supported_input_types	lbann::generic_data_reader	protected
m_transform_pipeline	lbann::generic_data_reader	protected
m_unk	lbann::smiles_data_reader	private
m_unused_indices	lbann::generic_data_reader
m_use_data_store	lbann::generic_data_reader	protected
m_use_fraction	lbann::generic_data_reader
m_using_random_node	lbann::generic_data_reader	mutableprotected
m_verbose	lbann::generic_data_reader	protected
m_vocab	lbann::smiles_data_reader	private
m_vocab_inv	lbann::smiles_data_reader	private
offset_map_t typedef	lbann::smiles_data_reader
offset_t typedef	lbann::smiles_data_reader
OffsetAndLengthBinarySize	lbann::smiles_data_reader	private
OffsetBinarySize	lbann::smiles_data_reader	private
open_file(size_t index)	lbann::data_reader_sample_list< sample_list_ifstream< long long > >
operator=(const smiles_data_reader &)	lbann::smiles_data_reader
data_reader_sample_list< sample_list_ifstream< long long > >::operator=(const data_reader_sample_list &)	lbann::data_reader_sample_list< sample_list_ifstream< long long > >
lbann::generic_data_reader::operator=(const generic_data_reader &)=default	lbann::generic_data_reader
position_is_overrun() const	lbann::generic_data_reader	inlinevirtual
position_valid() const	lbann::generic_data_reader	inlinevirtual
post_update()	lbann::generic_data_reader	inlinevirtual
postprocess_data_source(int tid)	lbann::generic_data_reader	inlineprotectedvirtual
preload_data_store()	lbann::generic_data_reader	virtual
preprocess_data_source(int tid)	lbann::generic_data_reader	inlineprotectedvirtual
priming_data_store() const	lbann::generic_data_reader	virtual
print_get_methods(const std::string filename)	lbann::generic_data_reader
print_statistics() const	lbann::smiles_data_reader	private
read_metadata_file(std::vector< size_t > &samples_per_file, std::vector< std::string > &data_filenames, std::vector< std::string > &offsets_filenames)	lbann::smiles_data_reader	private
read_offset_data(std::vector< SampleData > &data)	lbann::smiles_data_reader	private
resize_shuffled_indices()	lbann::generic_data_reader
sample_file_id_type typedef	lbann::data_reader_sample_list< sample_list_ifstream< long long > >
sample_name_type typedef	lbann::data_reader_sample_list< sample_list_ifstream< long long > >
sample_type typedef	lbann::data_reader_sample_list< sample_list_ifstream< long long > >
save_to_checkpoint_distributed(persist &p, execution_mode mode)	lbann::generic_data_reader
save_to_checkpoint_shared(persist &p, execution_mode mode)	lbann::generic_data_reader
select_subset_of_data()	lbann::generic_data_reader
serialize(Archive &ar)	lbann::generic_data_reader
set_absolute_sample_count(size_t s)	lbann::generic_data_reader
set_base_offset(const int s)	lbann::generic_data_reader	inlinevirtual
set_comm(lbann_comm *comm)	lbann::generic_data_reader	inline
set_data_filename(std::string s)	lbann::generic_data_reader
set_data_sample_list(std::string s)	lbann::generic_data_reader
set_data_store(data_store_conduit *g)	lbann::generic_data_reader
set_execution_mode_split_fraction(execution_mode m, double s)	lbann::generic_data_reader	virtual
set_file_dir(std::string s)	lbann::generic_data_reader
set_first_n(int n)	lbann::generic_data_reader
set_gan_label_value(int gan_label_value)	lbann::generic_data_reader	inline
set_gan_labelling(bool has_gan_labelling)	lbann::generic_data_reader	inline
set_has_data_field(data_field_type const data_field, const bool b)	lbann::generic_data_reader	inline
set_has_labels(const bool b)	lbann::generic_data_reader	inlinevirtual
set_has_responses(const bool b)	lbann::generic_data_reader	inlinevirtual
set_initial_position()	lbann::generic_data_reader	inline
set_iteration_stride(const int s)	lbann::generic_data_reader	inline
set_label_filename(std::string s)	lbann::generic_data_reader
set_last_mini_batch_size(const int s)	lbann::generic_data_reader	inline
set_linearized_data_size(size_t s)	lbann::smiles_data_reader	inline
set_local_file_dir(std::string s)	lbann::generic_data_reader
set_max_files_to_load(size_t n)	lbann::generic_data_reader	inline
set_metadata_filename(std::string fn)	lbann::smiles_data_reader	inline
set_mini_batch_size(const int s)	lbann::generic_data_reader
set_num_iterations_per_epoch(int num_iterations_per_epoch)	lbann::generic_data_reader	inline
set_num_parallel_readers(const int s)	lbann::generic_data_reader	inline
set_offset(size_t index, long long offset, unsigned short length)	lbann::smiles_data_reader
set_reset_mini_batch_index(const int s)	lbann::generic_data_reader	inlinevirtual
set_role(std::string role)	lbann::generic_data_reader	virtual
set_sample_stride(const int s)	lbann::generic_data_reader	inline
set_sequence_length(int n)	lbann::smiles_data_reader	inline
set_shuffle(bool b)	lbann::generic_data_reader	inline
set_shuffled_indices(const std::vector< int > &indices)	lbann::generic_data_reader	inline
set_stride_to_last_mini_batch(const int s)	lbann::generic_data_reader	inline
set_stride_to_next_mini_batch(const int s)	lbann::generic_data_reader	inline
set_transform_pipeline(transform::transform_pipeline &&tp)	lbann::generic_data_reader	inline
set_use_data_store(bool s)	lbann::generic_data_reader	inline
set_use_fraction(double s)	lbann::generic_data_reader
setup(int num_io_threads, observer_ptr< thread_pool > io_thread_pool)	lbann::generic_data_reader	virtual
setup_data_store(int mini_batch_size)	lbann::generic_data_reader
shuffle_indices(rng_gen &gen) override	lbann::data_reader_sample_list< sample_list_ifstream< long long > >	virtual
lbann::generic_data_reader::shuffle_indices()	lbann::generic_data_reader	protectedvirtual
smiles_data_reader(const bool shuffle)	lbann::smiles_data_reader
smiles_data_reader(const smiles_data_reader &)	lbann::smiles_data_reader
start_data_store_mini_batch_exchange()	lbann::generic_data_reader
unused_index_map_t typedef	lbann::generic_data_reader
update(bool is_active_reader)	lbann::generic_data_reader	virtual
use_unused_index_set(execution_mode m) override	lbann::smiles_data_reader	virtual
~data_reader_sample_list() override	lbann::data_reader_sample_list< sample_list_ifstream< long long > >	inline
~generic_data_reader()	lbann::generic_data_reader	virtual
~smiles_data_reader() override	lbann::smiles_data_reader